Only in maxent-20061005: ._.svn Only in maxent-20061005: ._ChangeLog Only in maxent-20061005: ._INSTALL Only in maxent-20061005: ._Jamfile Only in maxent-20061005: ._Jamrules.in Only in maxent-20061005: ._LICENSE Only in maxent-20061005: ._Makefile Only in maxent-20061005: ._NEWS Only in maxent-20061005: ._README Only in maxent-20061005: ._THANKS Only in maxent-20061005: ._aclocal.m4 Only in maxent-20061005: ._config.h.in Only in maxent-20061005: ._configure Only in maxent-20061005: ._configure.in Only in maxent-20061005: ._doc Only in maxent-20061005: ._example Only in maxent-20061005: ._lib Only in maxent-20061005: ._python Only in maxent-20061005: ._script Only in maxent-20061005: ._src Only in maxent-20061005: ._test Only in maxent-20061005: ._tools Only in maxent-20061005/.svn: ._README.txt Only in maxent-20061005/.svn: ._empty-file Only in maxent-20061005/.svn: ._entries Only in maxent-20061005/.svn: ._format Only in maxent-20061005/.svn: ._prop-base Only in maxent-20061005/.svn: ._props Only in maxent-20061005/.svn: ._text-base Only in maxent-20061005/.svn: ._tmp Only in maxent-20061005/.svn: ._wcprops Only in maxent-20061005/.svn/prop-base: ._ChangeLog.svn-base Only in maxent-20061005/.svn/prop-base: ._INSTALL.svn-base Only in maxent-20061005/.svn/prop-base: ._Jamfile.svn-base Only in maxent-20061005/.svn/prop-base: ._Jamrules.in.svn-base Only in maxent-20061005/.svn/prop-base: ._Jamrules.svn-base Only in maxent-20061005/.svn/prop-base: ._LICENSE.svn-base Only in maxent-20061005/.svn/prop-base: ._Makefile.svn-base Only in maxent-20061005/.svn/prop-base: ._NEWS.svn-base Only in maxent-20061005/.svn/prop-base: ._README.svn-base Only in maxent-20061005/.svn/prop-base: ._THANKS.svn-base Only in maxent-20061005/.svn/prop-base: ._aclocal.m4.svn-base Only in maxent-20061005/.svn/prop-base: ._config.h.in.svn-base Only in maxent-20061005/.svn/prop-base: ._config.h.svn-base Only in maxent-20061005/.svn/prop-base: ._configure.in.svn-base Only in maxent-20061005/.svn/prop-base: ._configure.svn-base Only in maxent-20061005/.svn/props: ._ChangeLog.svn-work Only in maxent-20061005/.svn/props: ._INSTALL.svn-work Only in maxent-20061005/.svn/props: ._Jamfile.svn-work Only in maxent-20061005/.svn/props: ._Jamrules.in.svn-work Only in maxent-20061005/.svn/props: ._Jamrules.svn-work Only in maxent-20061005/.svn/props: ._LICENSE.svn-work Only in maxent-20061005/.svn/props: ._Makefile.svn-work Only in maxent-20061005/.svn/props: ._NEWS.svn-work Only in maxent-20061005/.svn/props: ._README.svn-work Only in maxent-20061005/.svn/props: ._THANKS.svn-work Only in maxent-20061005/.svn/props: ._aclocal.m4.svn-work Only in maxent-20061005/.svn/props: ._config.h.in.svn-work Only in maxent-20061005/.svn/props: ._config.h.svn-work Only in maxent-20061005/.svn/props: ._configure.in.svn-work Only in maxent-20061005/.svn/props: ._configure.svn-work Only in maxent-20061005/.svn/text-base: ._ChangeLog.svn-base Only in maxent-20061005/.svn/text-base: ._INSTALL.svn-base Only in maxent-20061005/.svn/text-base: ._Jamfile.svn-base Only in maxent-20061005/.svn/text-base: ._Jamrules.in.svn-base Only in maxent-20061005/.svn/text-base: ._Jamrules.svn-base Only in maxent-20061005/.svn/text-base: ._LICENSE.svn-base Only in maxent-20061005/.svn/text-base: ._Makefile.svn-base Only in maxent-20061005/.svn/text-base: ._NEWS.svn-base Only in maxent-20061005/.svn/text-base: ._README.svn-base Only in maxent-20061005/.svn/text-base: ._THANKS.svn-base Only in maxent-20061005/.svn/text-base: ._aclocal.m4.svn-base Only in maxent-20061005/.svn/text-base: ._config.h.in.svn-base Only in maxent-20061005/.svn/text-base: ._config.h.svn-base Only in maxent-20061005/.svn/text-base: ._configure.in.svn-base Only in maxent-20061005/.svn/text-base: ._configure.svn-base Only in maxent-20061005/.svn/tmp: ._prop-base Only in maxent-20061005/.svn/tmp: ._props Only in maxent-20061005/.svn/tmp: ._text-base Only in maxent-20061005/.svn/tmp: ._wcprops diff -cr maxent-old/Jamrules maxent-20061005/Jamrules *** maxent-old/Jamrules Thu Oct 5 07:37:21 2006 --- maxent-20061005/Jamrules Thu Nov 20 20:27:40 2008 *************** *** 1,75 **** ! # Please read the comments below carefully before you proceed! ! # ! # This file is for system that can not run `configure' script i.e. Win32 ! # platforms. If you are running a Unix box, MingW32 or Cygwin please run ! # ./configure instead and use the auto-generated Jamrules file. ! ! # uncomment the following line if you have Intel Fortran Compiler installed ! USE_FORTRAN = 1 ; ! if $(BCCROOT) { ! Echo Building with Borland C++ Tool Chain ; ! # tested on Borland Free C++ Compiler 5.5 with STLPort 4.5.3 ! STDHDRS = ; ! STDLIBPATH = ; ! CCFLAGS = -w- -tWC -DWIN32 -DHAVE_CONFIG_H -DBOOST_DISABLE_THREADS -DHAVE_STRING_H=1 -P ; ! C++FLAGS = -w- -tWC -DWIN32 -DHAVE_CONFIG_H -DNDEBUG -DBOOST_DISABLE_THREADS -DBOOST_DISABLE_ASSERTS ; ! #OPTIM = -Od ; ! OPTIM = -O2 -6 -DNDEBUG ; # also tried -Ov and -xf but no obvious improvement ! LINKFLAGS = -tWC ; ! LINKLIBS = ; ! } else if $(INTEL_COMPILER80) { ! Echo Building with Intel C++ for win32 Tool Chain ; ! # tested on Intel C++ 8.0 with MSVC7.1's headers & libs ! # uncomment the following line if you use STLPort with threading on ! # STLPORT_CFLAGS = /MT ! STDHDRS = ; ! STDLIBPATH = ; ! CC = icl.exe ; ! CCFLAGS = /nologo /w /D "WIN32" /D "HAVE_CONFIG_H" /DHAVE_STRING_H=1 -DBOOST_DISABLE_THREADS ! $(STLPORT_CFLAGS) ; ! C++ = icl.exe ; ! C++FLAGS = /nologo /w /Zc:wchar_t /D "WIN32" /D "HAVE_CONFIG_H" ! -DBOOST_DISABLE_THREADS /D__EXCEPTIONS $(STLPORT_CFLAGS) ; ! #OPTIM = /Od /G6 ; # use /G7 for Intel Pentium 4 processors ! OPTIM = -DNDEBUG /O3 /G6 ; # use /G7 for Intel Pentium 4 processors ! LINK = icl.exe ; ! LINKFLAGS = ; ! LINKLIBS = ; ! actions Link bind NEEDLIBS ! { ! $(LINK) $(LINKFLAGS) /Qoption,link,/out:$(<) $(UNDEFS) $(>) $(NEEDLIBS) ! } ! } else if $(MSVCDIR) { ! Echo Building with MSVC Tool Chain ; ! # tested on MSVC7.1 with STLPort ! # ! STLPORT_CFLAGS = /I$(MSVCDIR)/stlport/stlport ; ! CCFLAGS = /nologo /MD /GR /EHsc /w /D "WIN32" /D "HAVE_CONFIG_H" ! /DHAVE_STRING_H=1 -DBOOST_DISABLE_THREADS $(STLPORT_CFLAGS) ; ! C++FLAGS = /nologo /MD /GR /EHsc /w /D "WIN32" /D "HAVE_CONFIG_H" ! /DHAVE_STRING_H=1 -DBOOST_DISABLE_THREADS $(STLPORT_CFLAGS) ; ! #OPTIM = -DNDEBUG ; ! OPTIM = -DNDEBUG /O2 ; ! LINKFLAGS = /nologo ; ! LINKLIBS = ; ! ! if $(USE_FORTRAN) { ! # for Intel Fortran Compiler on win32 ! CCFLAGS += /D"HAVE_FORTRAN"=1 ; ! C++FLAGS += /D"HAVE_FORTRAN"=1 ; ! FORTRAN = ifort.exe ; ! FORTRANFLAGS = /MD /O3 ; ! HAVE_FORTRAN = ifort.exe ; ! actions Fortran ! { ! $(FORTRAN) $(FORTRANFLAGS) /c /Fo$(<) $(>) ! } ! } ! } else { ! EXIT C++ Compiler not found on Win32. Set BCCROOT, MSVCDIR or ! INTEL_COMPILER80 to the root of the Borland, Microsoft or Intel Compiler ! directories. Read the manual.pdf for more. ; } ! HDRS = $(TOP) lib ; --- 1,35 ---- ! ! CC = /home/vax3/u17/post/projects/maxentlm/maxent-20061005/ccdv gcc ; ! CCFLAGS = -g -O2 -I/u/post/r/include -I/u/post/r/lib/include -Wall -DNDEBUG -DHAVE_CONFIG_H -DBOOST_DISABLE_THREADS ; # no need to link pthread lib ! C++ = /home/vax3/u17/post/projects/maxentlm/maxent-20061005/ccdv g++ ; ! C++FLAGS = -g -O2 -I/u/post/r/include -I/u/post/r/lib/include -Wall -DNDEBUG -DHAVE_CONFIG_H -DBOOST_DISABLE_THREADS ; ! FORTRAN = /home/vax3/u17/post/projects/maxentlm/maxent-20061005/ccdv f95 ; ! FORTRANFLAGS = -g -O2 ; ! HAVE_FORTRAN = f95 ; ! HAVE_GETOPT_LONG = yes ; ! OPTIM = -O3 ; ! FCLIBS = -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.. -lgfortranbegin -lgfortran -lm -lgcc_s ; ! LINK = /home/vax3/u17/post/projects/maxentlm/maxent-20061005/ccdv g++ ; ! LINKLIBS = -lz -lm $(FCLIBS) ; ! TARGET_DIR = src/opt ; ! HDRS = $(TOP) ; ! ! PREFIX = /usr/local ; ! BINDIR = $(PREFIX)/bin ; ! LIBDIR = $(PREFIX)/lib ; ! MANDIR = $(PREFIX)/man ; ! STDHDRS = $(PREFIX)/include ; ! ! actions Fortran ! { ! $(FORTRAN) $(FORTRANFLAGS) -c -o $(<) $(>) } ! HOST_OS = linux-gnu ; ! ! if $(OS) != MINGW && $(HOST_OS) = mingw32 # fix for cross-mingw tool chain ! { ! AR = "$(AR) cru" ; ! SUFEXE = .exe ; ! } Only in maxent-20061005: ccdv Only in maxent-20061005: ccdv.dSYM diff -cr maxent-old/config.h maxent-20061005/config.h *** maxent-old/config.h Thu Oct 5 07:37:21 2006 --- maxent-20061005/config.h Thu Nov 13 20:27:05 2008 *************** *** 1,29 **** ! /* Please read the comments below carefully before you proceed! ! * ! * This file is for system that can not run `configure' script i.e. Win32 ! * platforms. If you are running a Unix box, MingW32 or Cygwin please run ! *./configure instead and use the auto-generated config.h file. ! */ ! ! #ifndef CONFIG_H ! #define CONFIG_H /* package's version */ ! #define CMDLINE_PARSER_VERSION "20061005" ! #if defined(__BORLANDC__) ! # define CXX_COMPILER "bcc" ! #elif defined(__INTEL_COMPILER) ! # define CXX_COMPILER "intelcc" ! #elif defined(_MSC_VER) ! # define CXX_COMPILER "msvc" ! #elif defined(__GNUC__) ! # define CXX_COMPILER "gcc" ! #else ! # define CXX_COMPILER "unknown-cc" ! #endif ! /* package name */ ! #define CMDLINE_PARSER_PACKAGE "maxent" "-" CXX_COMPILER ! #endif // CONFIG_H --- 1,81 ---- ! /* config.h. Generated by configure. */ ! /* config.h.in. Generated from configure.in by autoheader. */ /* package's version */ ! #define CMDLINE_PARSER_VERSION "version-devel" ! ! /* defined to 1 if a fortran compiler is found */ ! #define HAVE_FORTRAN 1 ! ! /* Define to 1 if you have the `getopt_long' function. */ ! #define HAVE_GETOPT_LONG 1 ! ! /* Define to 1 if you have the `getpagesize' function. */ ! #define HAVE_GETPAGESIZE 1 ! ! /* Define to 1 if you have the `gettimeofday' function. */ ! #define HAVE_GETTIMEOFDAY 1 ! ! /* Define to 1 if you have the header file. */ ! /* #undef HAVE_IEEEFP_H */ ! ! /* Define to 1 if you have the header file. */ ! #define HAVE_INTTYPES_H 1 ! ! /* Define to 1 if you have the `gnugetopt' library (-lgnugetopt). */ ! /* #undef HAVE_LIBGNUGETOPT */ ! ! /* Define to 1 if you have the `m' library (-lm). */ ! #define HAVE_LIBM 1 ! ! /* Define to 1 if you have the `z' library (-lz). */ ! #define HAVE_LIBZ 1 ! ! /* Define to 1 if you have the header file. */ ! #define HAVE_MEMORY_H 1 ! ! /* Define to 1 if you 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maxent-20061005/python: ._maxent.i Only in maxent-20061005/python: ._maxent_wrap.cxx Only in maxent-20061005/python: ._orange Only in maxent-20061005/python: ._setup.py.in Only in maxent-20061005/python/.svn: ._README.txt Only in maxent-20061005/python/.svn: ._empty-file Only in maxent-20061005/python/.svn: ._entries Only in maxent-20061005/python/.svn: ._format Only in maxent-20061005/python/.svn: ._prop-base Only in maxent-20061005/python/.svn: ._props Only in maxent-20061005/python/.svn: ._text-base Only in maxent-20061005/python/.svn: ._tmp Only in maxent-20061005/python/.svn: ._wcprops Only in maxent-20061005/python/.svn/prop-base: ._README.svn-base Only in maxent-20061005/python/.svn/prop-base: ._genwrap.sh.svn-base Only in maxent-20061005/python/.svn/prop-base: ._maxent.i.svn-base Only in maxent-20061005/python/.svn/prop-base: ._maxent_wrap.cxx.svn-base Only in maxent-20061005/python/.svn/prop-base: ._setup.py.in.svn-base Only in maxent-20061005/python/.svn/prop-base: ._setup.py.svn-base Only in maxent-20061005/python/.svn/props: ._README.svn-work Only in maxent-20061005/python/.svn/props: ._genwrap.sh.svn-work Only in maxent-20061005/python/.svn/props: ._maxent.i.svn-work Only in maxent-20061005/python/.svn/props: ._maxent_wrap.cxx.svn-work Only in maxent-20061005/python/.svn/props: ._setup.py.in.svn-work Only in maxent-20061005/python/.svn/props: ._setup.py.svn-work Only in maxent-20061005/python/.svn/text-base: ._README.svn-base Only in maxent-20061005/python/.svn/text-base: ._genwrap.sh.svn-base Only in maxent-20061005/python/.svn/text-base: ._maxent.i.svn-base Only in maxent-20061005/python/.svn/text-base: ._maxent_wrap.cxx.svn-base Only in maxent-20061005/python/.svn/text-base: ._setup.py.in.svn-base Only in maxent-20061005/python/.svn/text-base: ._setup.py.svn-base Only in maxent-20061005/python/.svn/tmp: ._prop-base Only in maxent-20061005/python/.svn/tmp: ._props Only in maxent-20061005/python/.svn/tmp: ._text-base Only in maxent-20061005/python/.svn/tmp: ._wcprops Only in maxent-20061005/python/maxent: ._.svn Only in maxent-20061005/python/maxent: .___init__.py Only in maxent-20061005/python/maxent: ._cmaxent.py Only in maxent-20061005/python/maxent: ._pymaxent.py Only in maxent-20061005/python/maxent/.svn: ._README.txt Only in maxent-20061005/python/maxent/.svn: ._empty-file Only in maxent-20061005/python/maxent/.svn: ._entries Only in maxent-20061005/python/maxent/.svn: ._format Only in maxent-20061005/python/maxent/.svn: ._prop-base Only in maxent-20061005/python/maxent/.svn: ._props Only in maxent-20061005/python/maxent/.svn: ._text-base Only in maxent-20061005/python/maxent/.svn: ._tmp Only in maxent-20061005/python/maxent/.svn: ._wcprops Only in maxent-20061005/python/maxent/.svn/prop-base: .___init__.py.svn-base Only in maxent-20061005/python/maxent/.svn/prop-base: ._cmaxent.py.svn-base Only in maxent-20061005/python/maxent/.svn/prop-base: ._pymaxent.py.svn-base Only in maxent-20061005/python/maxent/.svn/props: .___init__.py.svn-work Only in maxent-20061005/python/maxent/.svn/props: ._cmaxent.py.svn-work Only in maxent-20061005/python/maxent/.svn/props: ._pymaxent.py.svn-work Only in maxent-20061005/python/maxent/.svn/text-base: .___init__.py.svn-base Only in maxent-20061005/python/maxent/.svn/text-base: ._cmaxent.py.svn-base Only in maxent-20061005/python/maxent/.svn/text-base: ._pymaxent.py.svn-base Only in maxent-20061005/python/maxent/.svn/tmp: ._prop-base Only in maxent-20061005/python/maxent/.svn/tmp: ._props Only in maxent-20061005/python/maxent/.svn/tmp: ._text-base Only in maxent-20061005/python/maxent/.svn/tmp: ._wcprops Only in maxent-20061005/python/orange: ._.svn Only in maxent-20061005/python/orange: ._README Only in maxent-20061005/python/orange: ._orngMaxent.py Only in maxent-20061005/python/orange: ._setup.py Only in maxent-20061005/python/orange: ._voting.tab Only in maxent-20061005/python/orange/.svn: ._README.txt Only in maxent-20061005/python/orange/.svn: ._empty-file Only in maxent-20061005/python/orange/.svn: ._entries Only in maxent-20061005/python/orange/.svn: ._format Only in maxent-20061005/python/orange/.svn: ._prop-base Only in maxent-20061005/python/orange/.svn: ._props Only in maxent-20061005/python/orange/.svn: ._text-base Only in maxent-20061005/python/orange/.svn: ._tmp Only in maxent-20061005/python/orange/.svn: ._wcprops Only in maxent-20061005/python/orange/.svn/prop-base: ._README.svn-base Only in maxent-20061005/python/orange/.svn/prop-base: ._orngMaxent.py.svn-base Only in maxent-20061005/python/orange/.svn/prop-base: ._setup.py.svn-base Only in maxent-20061005/python/orange/.svn/prop-base: ._voting.tab.svn-base Only in maxent-20061005/python/orange/.svn/props: ._README.svn-work Only in maxent-20061005/python/orange/.svn/props: ._orngMaxent.py.svn-work Only in maxent-20061005/python/orange/.svn/props: ._setup.py.svn-work Only in maxent-20061005/python/orange/.svn/props: ._voting.tab.svn-work Only in maxent-20061005/python/orange/.svn/text-base: ._README.svn-base Only in maxent-20061005/python/orange/.svn/text-base: ._orngMaxent.py.svn-base Only in maxent-20061005/python/orange/.svn/text-base: ._setup.py.svn-base Only in maxent-20061005/python/orange/.svn/text-base: ._voting.tab.svn-base Only in maxent-20061005/python/orange/.svn/tmp: ._prop-base Only in maxent-20061005/python/orange/.svn/tmp: ._props Only in maxent-20061005/python/orange/.svn/tmp: ._text-base Only in maxent-20061005/python/orange/.svn/tmp: ._wcprops diff -cr maxent-old/python/setup.py maxent-20061005/python/setup.py *** maxent-old/python/setup.py Thu Oct 5 07:37:19 2006 --- maxent-20061005/python/setup.py Thu Nov 20 20:27:40 2008 *************** *** 21,30 **** "/GR", ] data_files = [('Lib/site-packages/maxent' , ! ['libifcoremd.dll', 'libmmd.dll', 'stlport_vc7146.dll']) ] opt_lib = [] - opt_lib_path = [] else: # unix libmaxent_name = 'maxent' --- 21,31 ---- "/GR", ] data_files = [('Lib/site-packages/maxent' , ! ['stlport_vc7146.dll', ! 'libifcoremd.dll', ! 'libmmd.dll']), ] opt_lib = [] else: # unix libmaxent_name = 'maxent' *************** *** 42,48 **** if ac_cv_lib_z_main == 'yes': opt_lib.append('z') ! fclibs = " -L/home/s0450736/opt/lib -L/usr/local/lib -L/usr/X11R6/lib -L/usr/lib/gcc/i386-redhat-linux/4.1.1 -L/usr/lib/gcc/i386-redhat-linux/4.1.1/../../.. -lgfortranbegin -lgfortran -lm -lgcc_s" if fclibs != '': for s in fclibs.split(): --- 43,49 ---- if ac_cv_lib_z_main == 'yes': opt_lib.append('z') ! fclibs = " -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.. -lgfortranbegin -lgfortran -lm -lgcc_s" if fclibs != '': for s in fclibs.split(): *************** *** 54,60 **** raise 'unknow FCLIBS item: %s' % s setup(name = "maxent", ! version = "20061005", author = "Zhang Le", author_email = "ejoy@users.sourceforge.net", url = "http://homepages.inf.ed.ac.uk/s0450736/maxent_toolkit.html", --- 55,61 ---- raise 'unknow FCLIBS item: %s' % s setup(name = "maxent", ! version = "version-devel", author = "Zhang Le", author_email = "ejoy@users.sourceforge.net", url = "http://homepages.inf.ed.ac.uk/s0450736/maxent_toolkit.html", Only in maxent-20061005/script: ._.svn Only in maxent-20061005/script: ._boostheaders.py Only in maxent-20061005/script: ._config.guess Only in maxent-20061005/script: ._config.sub Only in maxent-20061005/script: ._dist_bin.sh Only in maxent-20061005/script: ._filelist.txt Only in maxent-20061005/script: ._fileperm.sh Only in maxent-20061005/script: ._install-sh Only in maxent-20061005/script: ._pkg_build.sh Only in maxent-20061005/script: ._pre_dist.sh Only in maxent-20061005/script: ._reconf.sh Only in maxent-20061005/script/.svn: ._README.txt Only in maxent-20061005/script/.svn: ._empty-file Only in maxent-20061005/script/.svn: ._entries Only in maxent-20061005/script/.svn: ._format Only in maxent-20061005/script/.svn: ._prop-base Only in maxent-20061005/script/.svn: ._props Only in maxent-20061005/script/.svn: ._text-base Only in maxent-20061005/script/.svn: ._tmp Only in maxent-20061005/script/.svn: ._wcprops Only in maxent-20061005/script/.svn/prop-base: ._boostheaders.py.svn-base Only in maxent-20061005/script/.svn/prop-base: ._config.guess.svn-base Only in maxent-20061005/script/.svn/prop-base: ._config.sub.svn-base Only in maxent-20061005/script/.svn/prop-base: ._dist_bin.sh.svn-base Only in maxent-20061005/script/.svn/prop-base: ._filelist.txt.svn-base Only in maxent-20061005/script/.svn/prop-base: ._fileperm.sh.svn-base Only in maxent-20061005/script/.svn/prop-base: ._install-sh.svn-base Only in maxent-20061005/script/.svn/prop-base: ._pkg_build.sh.svn-base Only in maxent-20061005/script/.svn/prop-base: ._pre_dist.sh.svn-base Only in maxent-20061005/script/.svn/prop-base: ._reconf.sh.svn-base Only in maxent-20061005/script/.svn/props: ._boostheaders.py.svn-work Only in maxent-20061005/script/.svn/props: ._config.guess.svn-work Only in maxent-20061005/script/.svn/props: ._config.sub.svn-work Only in maxent-20061005/script/.svn/props: ._dist_bin.sh.svn-work Only in maxent-20061005/script/.svn/props: ._filelist.txt.svn-work Only in maxent-20061005/script/.svn/props: ._fileperm.sh.svn-work Only in maxent-20061005/script/.svn/props: ._install-sh.svn-work Only in maxent-20061005/script/.svn/props: ._pkg_build.sh.svn-work Only in maxent-20061005/script/.svn/props: ._pre_dist.sh.svn-work Only in maxent-20061005/script/.svn/props: ._reconf.sh.svn-work Only in maxent-20061005/script/.svn/text-base: ._boostheaders.py.svn-base Only in maxent-20061005/script/.svn/text-base: ._config.guess.svn-base Only in maxent-20061005/script/.svn/text-base: ._config.sub.svn-base Only in maxent-20061005/script/.svn/text-base: ._dist_bin.sh.svn-base Only in maxent-20061005/script/.svn/text-base: ._filelist.txt.svn-base Only in maxent-20061005/script/.svn/text-base: ._fileperm.sh.svn-base Only in maxent-20061005/script/.svn/text-base: ._install-sh.svn-base Only in maxent-20061005/script/.svn/text-base: ._pkg_build.sh.svn-base Only in 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maxent-20061005/src: ._itemmap.hpp Only in maxent-20061005/src: ._itemmap.tcc Only in maxent-20061005/src: ._lbfgs.f Only in maxent-20061005/src: ._lbfgs.h Only in maxent-20061005/src: ._lbfgs_wrapper.c Only in maxent-20061005/src: ._lbfgstrainer.cpp Only in maxent-20061005/src: ._lbfgstrainer.hpp Only in maxent-20061005/src: ._line_mem_iterator.hpp Only in maxent-20061005/src: ._line_stream_iterator.hpp Only in maxent-20061005/src: ._maxent.cpp Only in maxent-20061005/src: ._maxent.ggo Only in maxent-20061005/src: ._maxent_cmdline.c Only in maxent-20061005/src: ._maxent_cmdline.h Only in maxent-20061005/src: ._maxentmodel.cpp Only in maxent-20061005/src: ._maxentmodel.hpp Only in maxent-20061005/src: ._meevent.hpp Only in maxent-20061005/src: ._mmapfile.c Only in maxent-20061005/src: ._mmapfile.h Only in maxent-20061005/src: ._mmapfile.hpp Only in maxent-20061005/src: ._modelfile.cpp Only in maxent-20061005/src: ._modelfile.hpp Only in maxent-20061005/src: ._opt.sh Only in maxent-20061005/src: ._rfevent.hpp Only in maxent-20061005/src: ._sdrive.c Only in maxent-20061005/src: ._token_mem_iterator.hpp Only in maxent-20061005/src: ._trainer.cpp Only in maxent-20061005/src: ._trainer.hpp Only in maxent-20061005/src/.svn: ._README.txt Only in maxent-20061005/src/.svn: ._empty-file Only in maxent-20061005/src/.svn: ._entries Only in maxent-20061005/src/.svn: ._format Only in maxent-20061005/src/.svn: ._prop-base Only in maxent-20061005/src/.svn: ._props Only in maxent-20061005/src/.svn: ._text-base Only in maxent-20061005/src/.svn: ._tmp Only in maxent-20061005/src/.svn: ._wcprops Only in maxent-20061005/src/.svn/prop-base: ._Jamfile.svn-base Only in maxent-20061005/src/.svn/prop-base: ._display.cpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._display.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._eventspace.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._eventspace.tcc.svn-base Only in maxent-20061005/src/.svn/prop-base: ._ext_algorithm.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._f77_dummy_main.cpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._finite.h.svn-base Only in maxent-20061005/src/.svn/prop-base: ._getopt.c.svn-base Only in maxent-20061005/src/.svn/prop-base: ._getopt.h.svn-base Only in maxent-20061005/src/.svn/prop-base: ._getopt1.c.svn-base Only in maxent-20061005/src/.svn/prop-base: ._gistrainer.cpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._gistrainer.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._hash_map.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._itemmap.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._itemmap.tcc.svn-base Only in maxent-20061005/src/.svn/prop-base: ._lbfgs.f.svn-base Only in maxent-20061005/src/.svn/prop-base: ._lbfgs.h.svn-base Only in maxent-20061005/src/.svn/prop-base: ._lbfgs_wrapper.c.svn-base Only in maxent-20061005/src/.svn/prop-base: ._lbfgstrainer.cpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._lbfgstrainer.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._line_mem_iterator.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._line_stream_iterator.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._maxent.cpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._maxent.ggo.svn-base Only in maxent-20061005/src/.svn/prop-base: ._maxent_cmdline.c.svn-base Only in maxent-20061005/src/.svn/prop-base: ._maxent_cmdline.h.svn-base Only in maxent-20061005/src/.svn/prop-base: ._maxentmodel.cpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._maxentmodel.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._meevent.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._mmapfile.c.svn-base Only in maxent-20061005/src/.svn/prop-base: ._mmapfile.h.svn-base Only in maxent-20061005/src/.svn/prop-base: ._mmapfile.hpp.svn-base Only in maxent-20061005/src/.svn/prop-base: ._modelfile.cpp.svn-base Only in 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maxent-20061005/src/.svn/props: ._getopt.c.svn-work Only in maxent-20061005/src/.svn/props: ._getopt.h.svn-work Only in maxent-20061005/src/.svn/props: ._getopt1.c.svn-work Only in maxent-20061005/src/.svn/props: ._gistrainer.cpp.svn-work Only in maxent-20061005/src/.svn/props: ._gistrainer.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._hash_map.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._itemmap.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._itemmap.tcc.svn-work Only in maxent-20061005/src/.svn/props: ._lbfgs.f.svn-work Only in maxent-20061005/src/.svn/props: ._lbfgs.h.svn-work Only in maxent-20061005/src/.svn/props: ._lbfgs_wrapper.c.svn-work Only in maxent-20061005/src/.svn/props: ._lbfgstrainer.cpp.svn-work Only in maxent-20061005/src/.svn/props: ._lbfgstrainer.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._line_mem_iterator.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._line_stream_iterator.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._maxent.cpp.svn-work Only in maxent-20061005/src/.svn/props: ._maxent.ggo.svn-work Only in maxent-20061005/src/.svn/props: ._maxent_cmdline.c.svn-work Only in maxent-20061005/src/.svn/props: ._maxent_cmdline.h.svn-work Only in maxent-20061005/src/.svn/props: ._maxentmodel.cpp.svn-work Only in maxent-20061005/src/.svn/props: ._maxentmodel.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._meevent.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._mmapfile.c.svn-work Only in maxent-20061005/src/.svn/props: ._mmapfile.h.svn-work Only in maxent-20061005/src/.svn/props: ._mmapfile.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._modelfile.cpp.svn-work Only in maxent-20061005/src/.svn/props: ._modelfile.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._opt.sh.svn-work Only in maxent-20061005/src/.svn/props: ._rfevent.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._sdrive.c.svn-work Only in maxent-20061005/src/.svn/props: ._token_mem_iterator.hpp.svn-work Only in maxent-20061005/src/.svn/props: ._trainer.cpp.svn-work Only in maxent-20061005/src/.svn/props: ._trainer.hpp.svn-work Only in maxent-20061005/src/.svn/text-base: ._Jamfile.svn-base Only in maxent-20061005/src/.svn/text-base: ._display.cpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._display.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._eventspace.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._eventspace.tcc.svn-base Only in maxent-20061005/src/.svn/text-base: ._ext_algorithm.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._f77_dummy_main.cpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._finite.h.svn-base Only in maxent-20061005/src/.svn/text-base: ._getopt.c.svn-base Only in maxent-20061005/src/.svn/text-base: ._getopt.h.svn-base Only in maxent-20061005/src/.svn/text-base: ._getopt1.c.svn-base Only in maxent-20061005/src/.svn/text-base: ._gistrainer.cpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._gistrainer.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._hash_map.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._itemmap.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._itemmap.tcc.svn-base Only in maxent-20061005/src/.svn/text-base: ._lbfgs.f.svn-base Only in maxent-20061005/src/.svn/text-base: ._lbfgs.h.svn-base Only in maxent-20061005/src/.svn/text-base: ._lbfgs_wrapper.c.svn-base Only in maxent-20061005/src/.svn/text-base: ._lbfgstrainer.cpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._lbfgstrainer.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._line_mem_iterator.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._line_stream_iterator.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._maxent.cpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._maxent.ggo.svn-base Only in maxent-20061005/src/.svn/text-base: ._maxent_cmdline.c.svn-base Only in maxent-20061005/src/.svn/text-base: ._maxent_cmdline.h.svn-base Only in maxent-20061005/src/.svn/text-base: ._maxentmodel.cpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._maxentmodel.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._meevent.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._mmapfile.c.svn-base Only in maxent-20061005/src/.svn/text-base: ._mmapfile.h.svn-base Only in maxent-20061005/src/.svn/text-base: ._mmapfile.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._modelfile.cpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._modelfile.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._opt.sh.svn-base Only in maxent-20061005/src/.svn/text-base: ._rfevent.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._sdrive.c.svn-base Only in maxent-20061005/src/.svn/text-base: ._token_mem_iterator.hpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._trainer.cpp.svn-base Only in maxent-20061005/src/.svn/text-base: ._trainer.hpp.svn-base Only in maxent-20061005/src/.svn/tmp: ._prop-base Only in maxent-20061005/src/.svn/tmp: ._props Only in maxent-20061005/src/.svn/tmp: ._text-base Only in maxent-20061005/src/.svn/tmp: ._wcprops Only in maxent-20061005/src: TAGS diff -cr maxent-old/src/display.cpp maxent-20061005/src/display.cpp *** maxent-old/src/display.cpp Thu Oct 5 07:37:19 2006 --- maxent-20061005/src/display.cpp Tue Nov 25 13:15:58 2008 *************** *** 39,44 **** --- 39,45 ---- namespace maxent { int verbose = 0; + int heldout_ll = 0; using namespace std; diff -cr maxent-old/src/display.hpp maxent-20061005/src/display.hpp *** maxent-old/src/display.hpp Thu Oct 5 07:37:19 2006 --- maxent-20061005/src/display.hpp Tue Nov 25 13:15:30 2008 *************** *** 39,44 **** --- 39,45 ---- * stdout. Set this flag to 0 to restrain verbose output. */ extern int verbose; + extern int heldout_ll; void display(const char *msg, ... ); // with newline void displayA(const char *msg, ... );// without newline diff -cr maxent-old/src/lbfgstrainer.cpp maxent-20061005/src/lbfgstrainer.cpp *** maxent-old/src/lbfgstrainer.cpp Thu Oct 5 07:37:19 2006 --- maxent-20061005/src/lbfgstrainer.cpp Fri Nov 28 21:01:06 2008 *************** *** 45,53 **** #include "lbfgs.h" namespace maxent{ ! using namespace std; ! void LBFGSTrainer::init_trainer() { assert(m_params->size() > 0); assert(m_es->size() > 0); --- 45,53 ---- #include "lbfgs.h" namespace maxent{ ! using namespace std; ! void LBFGSTrainer::init_trainer() { assert(m_params->size() > 0); assert(m_es->size() > 0); *************** *** 61,73 **** typedef hash_map , float, featid_hasher> FeatSumMap; FeatSumMap feat_sum; for (vector::const_iterator it = m_es->begin(); ! it != m_es->end(); ++it) { ! size_t len = it->context_size(); ! for (size_t i = 0; i < len; ++i) { ! feat_sum[make_pair(it->m_context[i].first,it->m_outcome)] += ! it->m_count * it->m_context[i].second; ! } ! m_N += it->m_count; } // Get the observed expectations of the features. Strictly speaking, --- 61,73 ---- typedef hash_map , float, featid_hasher> FeatSumMap; FeatSumMap feat_sum; for (vector::const_iterator it = m_es->begin(); ! it != m_es->end(); ++it) { ! size_t len = it->context_size(); ! for (size_t i = 0; i < len; ++i) { ! feat_sum[make_pair(it->m_context[i].first,it->m_outcome)] += ! it->m_count * it->m_context[i].second; ! } ! m_N += it->m_count; } // Get the observed expectations of the features. Strictly speaking, *************** *** 78,118 **** FeatSumMap::iterator it; for (size_t pid = 0; pid < m_params->size(); ++pid) { ! vector >& param = (*m_params)[pid]; ! for (size_t j = 0; j < param.size(); ++j) { ! it = feat_sum.find(make_pair(pid,param[j].first)); ! assert(it != feat_sum.end()); ! if (it == feat_sum.end()) ! throw runtime_error("broken training data: some in params not found in training data"); ! m_observed_expects[param[j].second] = -(it->second); ! } } ! } ! // test accuracy of current model on heldout events ! double LBFGSTrainer::heldout_accuracy() const { size_t correct = 0; size_t total = 0; vector q(m_n_outcomes); // q(y|x) for (vector::iterator it = m_heldout_es->begin(); ! it != m_heldout_es->end(); ++it) { ! total += it->m_count; ! size_t best_oid = eval(it->m_context,it->context_size(), q); ! if (best_oid == it->m_outcome) ! correct += it->m_count; } return double(correct)/total; ! } ! void LBFGSTrainer::train(size_t iter, double eps) { if (!m_params || !m_es) ! throw runtime_error("Can not train on an empty model"); init_trainer(); ! const double LOG_ZERO = log(DBL_MIN); vector q(m_n_outcomes); // q(y|x) int n = m_n_theta; int m = 5; --- 78,156 ---- FeatSumMap::iterator it; for (size_t pid = 0; pid < m_params->size(); ++pid) { ! vector >& param = (*m_params)[pid]; ! for (size_t j = 0; j < param.size(); ++j) { ! it = feat_sum.find(make_pair(pid,param[j].first)); ! assert(it != feat_sum.end()); ! if (it == feat_sum.end()) ! throw runtime_error("broken training data: some in params not found in training data"); ! m_observed_expects[param[j].second] = -(it->second); ! } ! } ! } ! ! double LBFGSTrainer::heldout_loglikelihood() const { ! const double LOG_ZERO = log(DBL_MIN)/log(2.0); ! size_t total = 0; ! double hfl = 0.0; ! int n = m_n_theta; ! boost::scoped_array grad(new double[n]); ! double* g = grad.get(); ! std::copy(m_observed_expects.get(), m_observed_expects.get() + n, g); ! vector q(m_n_outcomes); // q(y|x) ! for (vector::iterator it = m_heldout_es->begin(); ! it != m_heldout_es->end(); ++it) { ! total += it->m_count; ! eval(it->m_context,it->context_size(), q); ! ! // if (best_oid == it->m_outcome) ! // correct += it->m_count; ! ! // for (size_t i = 0; i < it->context_size(); ++i) { ! // size_t pid = it->m_context[i].first; ! // float fval = it->m_context[i].second; ! // vector >& param = (*m_params)[pid]; ! // for (size_t j = 0; j < param.size(); ++j) { ! // size_t oid = param[j].first; // outcome id ! // size_t fid = param[j].second; // feature id ! // g[fid] += it->m_count * q[oid] * fval; ! // } ! // } ! ! assert(finite(q[it->m_outcome])); ! double t = log(q[it->m_outcome]); ! if (finite(t)) ! hfl -= it->m_count * t; ! else ! hfl -= it->m_count * LOG_ZERO; } ! return -hfl/log(2.0)/total; ! } ! // test accuracy of current model on heldout events ! double LBFGSTrainer::heldout_accuracy() const { size_t correct = 0; size_t total = 0; vector q(m_n_outcomes); // q(y|x) for (vector::iterator it = m_heldout_es->begin(); ! it != m_heldout_es->end(); ++it) { ! total += it->m_count; ! size_t best_oid = eval(it->m_context,it->context_size(), q); ! if (best_oid == it->m_outcome) ! correct += it->m_count; } return double(correct)/total; ! } ! void LBFGSTrainer::train(size_t iter, double eps) { if (!m_params || !m_es) ! throw runtime_error("Can not train on an empty model"); init_trainer(); ! const double LOG_ZERO = log(DBL_MIN)/log(2.0); vector q(m_n_outcomes); // q(y|x) int n = m_n_theta; int m = 5; *************** *** 124,134 **** double f = 0.0; size_t correct; double heldout_acc = -1.0; boost::timer t; lbfgs_t* opt = lbfgs_create(n, m, eps); if (!opt) ! throw runtime_error("fail to initlize L-BFGS optimizer"); display(""); display("Starting L-BFGS iterations..."); --- 162,174 ---- double f = 0.0; size_t correct; double heldout_acc = -1.0; + double prev_score = -99999999; + double prev_prev_score = -99999999; boost::timer t; lbfgs_t* opt = lbfgs_create(n, m, eps); if (!opt) ! throw runtime_error("fail to initlize L-BFGS optimizer"); display(""); display("Starting L-BFGS iterations..."); *************** *** 142,219 **** display("Optimized version"); #endif ! display("iter eval loglikelihood training accuracy heldout accuracy"); display("=================================================================="); for (;opt->niter < (int)iter;) { ! // calculate loglikehood and gradient ! correct = 0; ! f = 0.0; ! std::copy(m_observed_expects.get(), m_observed_expects.get() + n, g); ! ! for (vector::iterator it = m_es->begin(); ! it != m_es->end(); ++it) { ! size_t best_oid = eval(it->m_context,it->context_size(), q); ! if (best_oid == it->m_outcome) ! correct += it->m_count; ! for (size_t i = 0; i < it->context_size(); ++i) { ! size_t pid = it->m_context[i].first; ! float fval = it->m_context[i].second; ! vector >& param = (*m_params)[pid]; ! for (size_t j = 0; j < param.size(); ++j) { ! size_t oid = param[j].first; ! size_t fid = param[j].second; ! g[fid] += it->m_count * q[oid] * fval; ! } ! } ! ! assert(finite(q[it->m_outcome])); ! double t = log(q[it->m_outcome]); ! if (finite(t)) ! f -= it->m_count * t; ! else ! f -= it->m_count * LOG_ZERO; ! } ! if (m_sigma2) { // applying Gaussian penality ! for (size_t i = 0;i < m_n_theta; ++i) { ! double penality = x[i]/m_sigma2[i]; ! g[i] += penality; ! f += (penality * x[i]) / 2; ! } } ! if (m_heldout_es && m_heldout_es->size() > 0) ! heldout_acc = heldout_accuracy(); ! int iflag = lbfgs_run(opt, x, &f, g); - if (iflag < 0) { - lbfgs_destory(opt); - throw runtime_error("lbfgs routine stops with an error"); - } else if (iflag == 0) { - display("Training terminats succesfully in %.2f seconds", t.elapsed()); - break; } else { ! // continue evaluations ! double acc = correct/double(m_N); ! if (m_heldout_es && m_heldout_es->size() > 0) { ! display("%3d %3d\t%E\t %.3f%%\t %.3f%%" , opt->niter , ! opt->nfuns , (-f/m_N) , (acc*100) , (heldout_acc * 100)); ! } else { ! display("%3d %3d\t%E\t %.3f%%\t %s", opt->niter, opt->nfuns , ! (-f/m_N) , (acc*100) , "N/A"); ! } } } if (opt->niter >= (int)iter) ! display("Maximum numbers of %d iterations reached in %.2f seconds", iter ! , t.elapsed()); display("Highest log-likelihood: %E", (-f/m_N)); lbfgs_destory(opt); ! } } // namespace maxent --- 182,280 ---- display("Optimized version"); #endif ! if (heldout_ll) ! display("iter eval loglikelihood training accuracy heldout loglike."); ! else ! display("iter eval loglikelihood training accuracy heldout accuracy"); display("=================================================================="); for (;opt->niter < (int)iter;) { ! // calculate loglikehood and gradient ! correct = 0; ! f = 0.0; ! std::copy(m_observed_expects.get(), m_observed_expects.get() + n, g); ! for (vector::iterator it = m_es->begin(); ! it != m_es->end(); ++it) { ! size_t best_oid = eval(it->m_context,it->context_size(), q); ! if (best_oid == it->m_outcome) ! correct += it->m_count; ! for (size_t i = 0; i < it->context_size(); ++i) { ! size_t pid = it->m_context[i].first; ! float fval = it->m_context[i].second; ! vector >& param = (*m_params)[pid]; ! for (size_t j = 0; j < param.size(); ++j) { ! size_t oid = param[j].first; ! size_t fid = param[j].second; ! g[fid] += it->m_count * q[oid] * fval; ! } } ! assert(finite(q[it->m_outcome])); ! double t = log(q[it->m_outcome])/log(2.0); ! if (finite(t)) ! f -= it->m_count * t; ! else ! f -= it->m_count * LOG_ZERO; ! } ! ! if (m_sigma2) { // applying Gaussian penality ! for (size_t i = 0;i < m_n_theta; ++i) { ! double penality = x[i]/m_sigma2[i]; ! g[i] += penality; ! f += (penality * x[i]) / 2; ! } ! } ! if (m_heldout_es && m_heldout_es->size() > 0) ! heldout_acc = maxent::heldout_ll ! ? heldout_loglikelihood() ! : heldout_accuracy(); ! ! int iflag = lbfgs_run(opt, x, &f, g); ! ! if (iflag < 0) { ! lbfgs_destory(opt); ! throw runtime_error("lbfgs routine stops with an error"); ! } else if (iflag == 0) { ! display("Training terminats succesfully in %.2f seconds", t.elapsed()); ! break; ! } else { ! // continue evaluations ! double acc = correct/double(m_N); ! if (m_heldout_es && m_heldout_es->size() > 0) { ! if (maxent::heldout_ll) ! display("%3d %3d\t%E\t %.3f%%\t %E" , opt->niter , ! opt->nfuns , (-f/m_N) , (acc*100) , heldout_acc); ! else ! display("%3d %3d\t%E\t %.3f%%\t %.3f%%" , opt->niter , ! opt->nfuns , (-f/m_N) , (acc*100) , (heldout_acc * 100)); } else { ! display("%3d %3d\t%E\t %.3f%%\t %s", opt->niter, opt->nfuns , ! (-f/m_N) , (acc*100) , "N/A"); ! } ! } ! ! if (maxent::heldout_ll) { ! if (heldout_acc < prev_prev_score) { ! display("Loglikelihood on test data decreasing, quitting after %.2f seconds", ! t.elapsed()); ! break; } + + prev_prev_score = prev_score; + prev_score = heldout_acc; + } } if (opt->niter >= (int)iter) ! display("Maximum numbers of %d iterations reached in %.2f seconds", iter ! , t.elapsed()); display("Highest log-likelihood: %E", (-f/m_N)); lbfgs_destory(opt); ! } } // namespace maxent diff -cr maxent-old/src/lbfgstrainer.hpp maxent-20061005/src/lbfgstrainer.hpp *** maxent-old/src/lbfgstrainer.hpp Thu Oct 5 07:37:19 2006 --- maxent-20061005/src/lbfgstrainer.hpp Tue Nov 25 09:28:29 2008 *************** *** 43,48 **** --- 43,49 ---- // void save_param_txt(const string& model) const; void init_trainer(); double heldout_accuracy() const; + double heldout_loglikelihood() const; #if !defined(_STLPORT_VERSION) && defined(_MSC_VER) && (_MSC_VER >= 1300) // for MSVC7's hash_map declaration diff -cr maxent-old/src/maxent.cpp maxent-20061005/src/maxent.cpp *** maxent-old/src/maxent.cpp Thu Oct 5 07:37:19 2006 --- maxent-20061005/src/maxent.cpp Thu Nov 27 22:11:14 2008 *************** *** 314,320 **** } void predict(const MaxentModel& m, const string& in_file, ! const string& out_file, bool output_prob) { ifstream input(in_file.c_str()); if (!input) throw runtime_error("unable to open data file to read"); --- 314,320 ---- } void predict(const MaxentModel& m, const string& in_file, ! const string& out_file, int output_what) { ifstream input(in_file.c_str()); if (!input) throw runtime_error("unable to open data file to read"); *************** *** 347,357 **** throw runtime_error(msg); } m.eval_all(context, outcomes, false); size_t max_i = 0; ! for (size_t i = 1; i < outcomes.size(); ++i) if (outcomes[i].second > outcomes[max_i].second) max_i = i; prediction = outcomes[max_i].first; --- 347,365 ---- throw runtime_error(msg); } + double outcome_prob = 0.0; + bool outcome_found = false; + m.eval_all(context, outcomes, false); size_t max_i = 0; ! for (size_t i = 0; i < outcomes.size(); ++i) { if (outcomes[i].second > outcomes[max_i].second) max_i = i; + if (outcomes[i].first == outcome) { + outcome_prob = outcomes[i].second; + outcome_found = true; + } + } prediction = outcomes[max_i].first; *************** *** 359,372 **** ++correct; if (output) { ! if (output_prob) { ! for (size_t i = 0; i < outcomes.size(); ++i) ! *output << outcomes[i].first << '\t' ! << outcomes[i].second << '\t'; ! *output << endl; ! } else { ! *output << prediction << endl; ! } } ++count; --- 367,384 ---- ++correct; if (output) { ! if (2 == output_what) { // output complete distribution ! for (size_t i = 0; i < outcomes.size(); ++i) ! *output << outcomes[i].first << '\t' ! << outcomes[i].second << '\t'; ! *output << endl; ! } else if (1 == output_what) { // output probability of prediction ! if (! outcome_found) ! cerr << "Warning: requested outcome '" << outcome << "' not found" << endl; ! *output << outcome_prob << endl; ! } else { // output prediction ! *output << prediction << endl; ! } } ++count; *************** *** 380,387 **** gengetopt_args_info args_info; /* let's call our CMDLINE Parser */ ! if (cmdline_parser (argc, argv, &args_info) != 0) ! return EXIT_FAILURE; string model_file; string in_file; --- 392,401 ---- gengetopt_args_info args_info; /* let's call our CMDLINE Parser */ ! if (cmdline_parser (argc, argv, &args_info) != 0) { ! cout << "EXITING ON FAILURE\n"; ! return EXIT_FAILURE; ! } string model_file; string in_file; *************** *** 397,402 **** --- 411,417 ---- } maxent::verbose = args_info.verbose_flag; + maxent::heldout_ll = args_info.heldout_ll; if (args_info.inputs_num > 0) { in_file = args_info.inputs[0]; *************** *** 421,432 **** estimate, args_info.gaussian_arg, args_info.random_flag); } else if (args_info.predict_given) { ! if (model_file == "") throw runtime_error("model name not given"); MaxentModel m; m.load(model_file); ! predict(m, in_file, out_file, args_info.detail_flag); } else { // training mode MaxentModel m; m.begin_add_event(); --- 436,448 ---- estimate, args_info.gaussian_arg, args_info.random_flag); } else if (args_info.predict_given) { ! if (model_file == "") throw runtime_error("model name not given"); MaxentModel m; m.load(model_file); ! int output_what = args_info.detail_flag ? 2 : (args_info.prob_flag ? 1 : 0); ! predict(m, in_file, out_file, output_what); } else { // training mode MaxentModel m; m.begin_add_event(); diff -cr maxent-old/src/maxent_cmdline.c maxent-20061005/src/maxent_cmdline.c *** maxent-old/src/maxent_cmdline.c Thu Oct 5 07:37:19 2006 --- maxent-20061005/src/maxent_cmdline.c Tue Nov 25 11:40:59 2008 *************** *** 43,53 **** --- 43,55 ---- printf(" -mSTRING --model=STRING set model filename\n"); printf(" -b --binary save model in binary format (default=off)\n"); printf(" -oSTRING --output=STRING prediction output filename\n"); + printf(" --prob output probability of listed outcome instead of prediction\n"); printf(" --detail output full distribution in prediction mode (default=off)\n"); printf(" -iINT --iter=INT iterations for training algorithm (default='30')\n"); printf(" -gFLOAT --gaussian=FLOAT set Gaussian prior, disable if 0 (default='0.0')\n"); printf(" -cINT --cutoff=INT set event cutoff (default='1')\n"); printf(" --heldout=STRING specify heldout data for training\n"); + printf(" -l display heldout ll instead of accuracy\n"); printf(" -r --random randomizing data in cross validation (default=off)\n"); printf(" --nommap do not use mmap() to read data (slow) (default=off)\n"); printf("\n"); *************** *** 92,102 **** --- 94,106 ---- args_info->binary_given = 0 ; args_info->output_given = 0 ; args_info->detail_given = 0 ; + args_info->prob_given = 0 ; args_info->iter_given = 0 ; args_info->gaussian_given = 0 ; args_info->cutoff_given = 0 ; args_info->heldout_given = 0 ; args_info->random_given = 0 ; + args_info->heldout_ll = 0 ; args_info->nommap_given = 0 ; args_info->predict_given = 0 ; args_info->cv_given = 0 ; *************** *** 108,113 **** --- 112,118 ---- args_info->binary_flag = 0;\ args_info->output_arg = NULL; \ args_info->detail_flag = 0;\ + args_info->prob_flag = 0;\ args_info->iter_arg = 30 ;\ args_info->gaussian_arg = 0.0 ;\ args_info->cutoff_arg = 1 ;\ *************** *** 140,145 **** --- 145,151 ---- { "binary", 0, NULL, 'b' }, { "output", 1, NULL, 'o' }, { "detail", 0, NULL, 0 }, + { "prob", 0, NULL, 0 }, { "iter", 1, NULL, 'i' }, { "gaussian", 1, NULL, 'g' }, { "cutoff", 1, NULL, 'c' }, *************** *** 154,160 **** }; stop_char = 0; ! c = getopt_long (argc, argv, "hVvm:bo:i:g:c:rpn:", long_options, &option_index); if (c == -1) break; /* Exit from `while (1)' loop. */ --- 160,166 ---- }; stop_char = 0; ! c = getopt_long (argc, argv, "hVvlm:bo:i:g:c:rpn:", long_options, &option_index); if (c == -1) break; /* Exit from `while (1)' loop. */ *************** *** 247,252 **** --- 253,267 ---- args_info->cutoff_arg = strtol (optarg,&stop_char,0); break; + case 'l': /* display loglikelihood of heldout data instead of accuracy */ + if (args_info->heldout_ll) { + fprintf (stderr, "%s: `-l' option given more than once\n", CMDLINE_PARSER_PACKAGE); + clear_args (); + exit (EXIT_FAILURE); + } + args_info->heldout_ll = 1; + break; + case 'r': /* randomizing data in cross validation. */ if (args_info->random_given) { *************** *** 278,284 **** } args_info->cv_given = 1; MODE_group_counter += 1; ! args_info->cv_arg = strtol (optarg,&stop_char,0); break; --- 293,299 ---- } args_info->cv_given = 1; MODE_group_counter += 1; ! args_info->cv_arg = strtol (optarg,&stop_char,0); break; *************** *** 296,301 **** --- 311,330 ---- args_info->detail_flag = !(args_info->detail_flag); break; } + + /* output probability of listed outcome, instead of model prediction */ + else if (strcmp (long_options[option_index].name, "prob") == 0) + { + if (args_info->prob_given) + { + fprintf (stderr, "%s: `--prob' option given more than once\n", CMDLINE_PARSER_PACKAGE); + clear_args (); + exit (EXIT_FAILURE); + } + args_info->prob_given = 1; + args_info->prob_flag = 1; + break; + } /* specify heldout data for training. */ else if (strcmp (long_options[option_index].name, "heldout") == 0) *************** *** 362,367 **** --- 391,404 ---- fprintf (stderr, "%s: option unknown: %c\n", CMDLINE_PARSER_PACKAGE, c); abort (); } /* switch */ + + if (args_info->detail_given && args_info->prob_given) { + printf ("%s: `--detail and --prob are mutually exclusive\n", CMDLINE_PARSER_PACKAGE); + fflush(stdout); + clear_args (); + exit (EXIT_FAILURE); + } + } /* while */ if ( MODE_group_counter > 1) diff -cr maxent-old/src/maxent_cmdline.h maxent-20061005/src/maxent_cmdline.h *** maxent-old/src/maxent_cmdline.h Thu Oct 5 07:37:19 2006 --- maxent-20061005/src/maxent_cmdline.h Tue Nov 25 11:40:17 2008 *************** *** 29,34 **** --- 29,35 ---- int binary_flag; /* save model in binary format (default=off). */ char * output_arg; /* prediction output filename. */ int detail_flag; /* output full distribution in prediction mode (default=off). */ + int prob_flag; /* outputs probability of outcome instead of prediction */ int iter_arg; /* iterations for training algorithm (default='30'). */ float gaussian_arg; /* set Gaussian prior, disable if 0 (default='0.0'). */ int cutoff_arg; /* set event cutoff (default='1'). */ *************** *** 44,54 **** --- 45,57 ---- int binary_given ; /* Whether binary was given. */ int output_given ; /* Whether output was given. */ int detail_given ; /* Whether detail was given. */ + int prob_given ; /* Whether prob was given. */ int iter_given ; /* Whether iter was given. */ int gaussian_given ; /* Whether gaussian was given. */ int cutoff_given ; /* Whether cutoff was given. */ int heldout_given ; /* Whether heldout was given. */ int random_given ; /* Whether random was given. */ + int heldout_ll ; /* Whether heldout log likelihood was given. */ int nommap_given ; /* Whether nommap was given. */ int predict_given ; /* Whether predict was given. */ int cv_given ; /* Whether cv was given. */ diff -cr maxent-old/src/maxentmodel.cpp maxent-20061005/src/maxentmodel.cpp *** maxent-old/src/maxentmodel.cpp Thu Oct 5 07:37:19 2006 --- maxent-20061005/src/maxentmodel.cpp Tue Mar 3 19:04:39 2009 *************** *** 49,55 **** #include "display.hpp" #include "gistrainer.hpp" #ifdef HAVE_FORTRAN ! #include "lbfgstrainer.hpp" #endif #include "modelfile.hpp" #include "maxentmodel.hpp" --- 49,55 ---- #include "display.hpp" #include "gistrainer.hpp" #ifdef HAVE_FORTRAN ! #include "lbfgstrainer.hpp" #endif #include "modelfile.hpp" #include "maxentmodel.hpp" *************** *** 67,77 **** * Construct an empty MaxentModel instance */ MaxentModel::MaxentModel(): ! m_n_theta(0) { ! //#ifdef NDEBUG ! // cerr << "Optimized Version" << endl; ! //#endif ! } /** * Signal the begining of adding event (the start of training). --- 67,77 ---- * Construct an empty MaxentModel instance */ MaxentModel::MaxentModel(): ! m_n_theta(0) { ! //#ifdef NDEBUG ! // cerr << "Optimized Version" << endl; ! //#endif ! } /** * Signal the begining of adding event (the start of training). *************** *** 82,93 **** * adding events. */ void MaxentModel::begin_add_event() { ! m_es.reset(new MEEventSpace); ! m_pred_map = m_es->feat_map(); ! m_outcome_map = m_es->outcome_map(); ! m_heldout_es.reset(new MEEventSpace(m_pred_map, m_outcome_map)); ! m_params.reset(new ParamsType); ! m_timer.reset(new boost::timer()); } /** --- 82,93 ---- * adding events. */ void MaxentModel::begin_add_event() { ! m_es.reset(new MEEventSpace); ! m_pred_map = m_es->feat_map(); ! m_outcome_map = m_es->outcome_map(); ! m_heldout_es.reset(new MEEventSpace(m_pred_map, m_outcome_map)); ! m_params.reset(new ParamsType); ! m_timer.reset(new boost::timer()); } /** *************** *** 101,114 **** * @param count How many times this event occurs in training set. default = 1 */ void MaxentModel::add_event( ! const context_type& context, ! const outcome_type& outcome, ! size_t count) { ! assert(m_es); ! assert(m_heldout_es); ! assert(m_pred_map); ! assert(m_outcome_map); ! m_es->add_event(context, count, outcome); } /** --- 101,114 ---- * @param count How many times this event occurs in training set. default = 1 */ void MaxentModel::add_event( ! const context_type& context, ! const outcome_type& outcome, ! size_t count) { ! assert(m_es); ! assert(m_heldout_es); ! assert(m_pred_map); ! assert(m_outcome_map); ! m_es->add_event(context, count, outcome); } /** *************** *** 124,163 **** * @param count How many times this event occurs in training set. default = 1 */ void MaxentModel::add_event( ! const vector& context, ! const outcome_type& outcome, ! size_t count) { ! context_type c(context.size()); ! for (size_t i = 0;i < context.size(); ++i) { ! c[i].first = context[i]; ! c[i].second = 1.0; ! } ! return add_event(c, outcome, count); } // TODO: test and document this function void MaxentModel::add_heldout_event( ! const context_type& context, ! const outcome_type& outcome, ! size_t count) { ! assert(m_es); ! assert(m_heldout_es); ! assert(m_pred_map); ! assert(m_outcome_map); ! m_heldout_es->add_event(context, count, outcome); } void MaxentModel::add_heldout_event( ! const vector& context, ! const outcome_type& outcome, ! size_t count) { ! context_type c(context.size()); ! for (size_t i = 0;i < context.size(); ++i) { ! c[i].first = context[i]; ! c[i].second = 1.0; ! } ! return add_heldout_event(c, outcome, count); } /** --- 124,163 ---- * @param count How many times this event occurs in training set. default = 1 */ void MaxentModel::add_event( ! const vector& context, ! const outcome_type& outcome, ! size_t count) { ! context_type c(context.size()); ! for (size_t i = 0;i < context.size(); ++i) { ! c[i].first = context[i]; ! c[i].second = 1.0; ! } ! return add_event(c, outcome, count); } // TODO: test and document this function void MaxentModel::add_heldout_event( ! const context_type& context, ! const outcome_type& outcome, ! size_t count) { ! assert(m_es); ! assert(m_heldout_es); ! assert(m_pred_map); ! assert(m_outcome_map); ! m_heldout_es->add_event(context, count, outcome); } void MaxentModel::add_heldout_event( ! const vector& context, ! const outcome_type& outcome, ! size_t count) { ! context_type c(context.size()); ! for (size_t i = 0;i < context.size(); ++i) { ! c[i].first = context[i]; ! c[i].second = 1.0; ! } ! return add_heldout_event(c, outcome, count); } /** *************** *** 171,309 **** * different from the usual sense of *feature cutoff*. */ void MaxentModel::end_add_event(size_t cutoff) { ! assert(m_es && m_heldout_es); ! ! //remove duplicate events and update event count ! display("Total %d training events and %d heldout events added in %.2f s", ! m_es->size(), m_heldout_es->size(), m_timer->elapsed()); ! display("Reducing events (cutoff is %d)...", cutoff); ! ! m_es->merge_events(cutoff); ! ! display("Reduced to %d training events", m_es->size()); ! ! // merge the held out events ! if (m_heldout_es->size() > 0) { ! m_heldout_es->merge_events(cutoff); ! display("Reduced to %d heldout events", m_heldout_es->size()); ! } ! ! // cerr << build_params(m_params, m_n_theta) << endl; ! // cerr << build_params2(m_params, m_n_theta) << endl; ! //TODO: the value of 150 needs more testing ! if (m_outcome_map->size() < 150) ! build_params(m_params, m_n_theta); ! else ! build_params2(m_params, m_n_theta); ! m_theta.reset(new double[m_n_theta]); ! // m_sigma.reset(0); } // TODO: test & document this function void MaxentModel::dump_events(const string& model, bool binary) const { ! if (!m_es || m_es->size() == 0) ! throw runtime_error("empty model, no events to dump"); ! if (binary) ! throw runtime_error("binary events file not supported yet"); ! display("Dumping events to %s.ev%s", model.c_str() , (binary?".bin":"")); if (binary) { ! string file = model + ".ev.bin"; ! // save_events_bin(f, *m_es); } else { ! string file = model + ".ev"; ! save_events_txt(file, *m_es); ! } ! ! // save model ! MaxentModelFile f; ! f.set_pred_map(m_pred_map); ! f.set_outcome_map(m_outcome_map); ! f.set_params(m_params, m_n_theta, m_theta); ! f.save(model, binary); ! ! if (m_heldout_es->size() > 0) { ! display("Dumping heldout events to %s.heldout.ev%s", model.c_str() , (binary?".bin":"")); ! if (binary) { ! string file = model + ".heldout.ev.bin"; ! // save_events_bin(f, *m_heldout_es); ! } else { ! string file = model + ".heldout.ev"; ! save_events_txt(file, *m_heldout_es); ! } } } double MaxentModel::build_params(shared_ptr& params, ! size_t& n_theta) const { ! boost::timer t; ! assert(m_es); ! typedef hash_map , bool, featid_hasher> FeatMap; ! ! FeatMap feat_map; ! size_t len; ! for (MEEventSpace::const_iterator it = m_es->begin(); ! it != m_es->end(); ++it) { ! len = it->context_size(); ! for (size_t i = 0; i < len; ++i) { ! feat_map[make_pair(it->m_context[i].first,it->m_outcome)] = true; ! } ! } ! params.reset(new ParamsType(m_pred_map->size())); ! ! n_theta = 0; ! for (size_t pid = 0; pid < m_pred_map->size(); ++pid) { ! vector >& param = (*params)[pid]; ! for (size_t oid = 0; oid < m_outcome_map->size(); ++oid) ! if (feat_map.find(make_pair(pid, oid)) != feat_map.end()) ! param.push_back(make_pair(oid, n_theta++)); ! } ! return t.elapsed(); } // the same as build_params() but specially designed for large outcome set. // You should use build_params() when working on problem with small outcome // set double MaxentModel::build_params2(shared_ptr& params, ! size_t& n_theta) const { ! boost::timer t; ! assert(m_es); ! //map: predicate -> set of outcomes ! //i.e., pred1->{out1, out2, out3, ...} ! typedef map > FeatMap; ! ! FeatMap feat_map; ! size_t len; ! for (MEEventSpace::const_iterator it = m_es->begin(); ! it != m_es->end(); ++it) { ! len = it->context_size(); ! for (size_t i = 0; i < len; ++i) { ! //Find (add if necessary) the set of outcomes for this predicate ! FeatMap::iterator outsetIt = feat_map.find(it->m_context[i].first); ! if(outsetIt == feat_map.end()) ! { ! outsetIt = feat_map.insert(make_pair( ! it->m_context[i].first,set() )).first; ! // outsetIt = feat_map.find(it->m_context[i].first); ! } ! //Add the outcome to the set for this predicate ! outsetIt->second.insert(it->m_outcome); } } ! params.reset(new ParamsType(m_pred_map->size())); ! n_theta = 0; ! for(FeatMap::const_iterator pidIt = feat_map.begin(); ! pidIt != feat_map.end();pidIt++) { ! vector >& param = (*params)[pidIt->first]; ! for(set::const_iterator oidIt = pidIt->second.begin(); ! oidIt != pidIt->second.end(); oidIt++) ! param.push_back(make_pair(*oidIt, n_theta++)); } ! return t.elapsed(); } /** --- 171,309 ---- * different from the usual sense of *feature cutoff*. */ void MaxentModel::end_add_event(size_t cutoff) { ! assert(m_es && m_heldout_es); ! //remove duplicate events and update event count ! display("Total %d training events and %d heldout events added in %.2f s", ! m_es->size(), m_heldout_es->size(), m_timer->elapsed()); ! display("Reducing events (cutoff is %d)...", cutoff); ! ! m_es->merge_events(cutoff); ! ! display("Reduced to %d training events", m_es->size()); ! ! // merge the held out events ! if (m_heldout_es->size() > 0) { ! m_heldout_es->merge_events(cutoff); ! display("Reduced to %d heldout events", m_heldout_es->size()); ! } ! ! // cerr << build_params(m_params, m_n_theta) << endl; ! // cerr << build_params2(m_params, m_n_theta) << endl; ! ! //TODO: the value of 150 needs more testing ! if (m_outcome_map->size() < 150) ! build_params(m_params, m_n_theta); ! else ! build_params2(m_params, m_n_theta); ! m_theta.reset(new double[m_n_theta]); ! // m_sigma.reset(0); } // TODO: test & document this function void MaxentModel::dump_events(const string& model, bool binary) const { ! if (!m_es || m_es->size() == 0) ! throw runtime_error("empty model, no events to dump"); ! if (binary) ! throw runtime_error("binary events file not supported yet"); ! display("Dumping events to %s.ev%s", model.c_str() , (binary?".bin":"")); ! if (binary) { ! string file = model + ".ev.bin"; ! // save_events_bin(f, *m_es); ! } else { ! string file = model + ".ev"; ! save_events_txt(file, *m_es); ! } ! ! // save model ! MaxentModelFile f; ! f.set_pred_map(m_pred_map); ! f.set_outcome_map(m_outcome_map); ! f.set_params(m_params, m_n_theta, m_theta); ! f.save(model, binary); ! ! if (m_heldout_es->size() > 0) { ! display("Dumping heldout events to %s.heldout.ev%s", model.c_str() , (binary?".bin":"")); if (binary) { ! string file = model + ".heldout.ev.bin"; ! // save_events_bin(f, *m_heldout_es); } else { ! string file = model + ".heldout.ev"; ! save_events_txt(file, *m_heldout_es); } + } } double MaxentModel::build_params(shared_ptr& params, ! size_t& n_theta) const { ! boost::timer t; ! assert(m_es); ! typedef hash_map , bool, featid_hasher> FeatMap; ! ! FeatMap feat_map; ! size_t len; ! for (MEEventSpace::const_iterator it = m_es->begin(); ! it != m_es->end(); ++it) { ! len = it->context_size(); ! for (size_t i = 0; i < len; ++i) { ! feat_map[make_pair(it->m_context[i].first,it->m_outcome)] = true; ! } ! } ! params.reset(new ParamsType(m_pred_map->size())); ! ! n_theta = 0; ! for (size_t pid = 0; pid < m_pred_map->size(); ++pid) { ! vector >& param = (*params)[pid]; ! for (size_t oid = 0; oid < m_outcome_map->size(); ++oid) ! if (feat_map.find(make_pair(pid, oid)) != feat_map.end()) ! param.push_back(make_pair(oid, n_theta++)); ! } ! return t.elapsed(); } // the same as build_params() but specially designed for large outcome set. // You should use build_params() when working on problem with small outcome // set double MaxentModel::build_params2(shared_ptr& params, ! size_t& n_theta) const { ! boost::timer t; ! assert(m_es); ! //map: predicate -> set of outcomes ! //i.e., pred1->{out1, out2, out3, ...} ! typedef map > FeatMap; ! ! FeatMap feat_map; ! size_t len; ! for (MEEventSpace::const_iterator it = m_es->begin(); ! it != m_es->end(); ++it) { ! len = it->context_size(); ! for (size_t i = 0; i < len; ++i) { ! //Find (add if necessary) the set of outcomes for this predicate ! FeatMap::iterator outsetIt = feat_map.find(it->m_context[i].first); ! if(outsetIt == feat_map.end()) ! { ! outsetIt = feat_map.insert(make_pair( ! it->m_context[i].first,set() )).first; ! // outsetIt = feat_map.find(it->m_context[i].first); } + //Add the outcome to the set for this predicate + outsetIt->second.insert(it->m_outcome); } ! } ! params.reset(new ParamsType(m_pred_map->size())); ! n_theta = 0; ! for(FeatMap::const_iterator pidIt = feat_map.begin(); ! pidIt != feat_map.end();pidIt++) { ! vector >& param = (*params)[pidIt->first]; ! for(set::const_iterator oidIt = pidIt->second.begin(); ! oidIt != pidIt->second.end(); oidIt++) ! param.push_back(make_pair(*oidIt, n_theta++)); } ! return t.elapsed(); } /** *************** *** 325,373 **** * \sa eval() */ void MaxentModel::eval_all(const context_type& context, ! std::vector >& outcomes, ! bool sort_result) const { ! assert(m_params); ! ! //TODO:static? ! static vector probs; ! if (probs.size() != m_outcome_map->size()) ! probs.resize(m_outcome_map->size()); ! fill(probs.begin(), probs.end(), 0.0); ! ! size_t pid; ! for (size_t i = 0; i < context.size(); ++i) { ! pid = m_pred_map->id(context[i].first); ! if (pid != m_pred_map->null_id) { ! std::vector >& param = (*m_params)[pid]; ! float fval = context[i].second; ! for(size_t j = 0;j < param.size(); ++j) ! probs[param[j].first] += m_theta[param[j].second] * fval; ! } else { ! //#warning how to deal with unseen predicts? ! //m_debug.debug(0,"Predict id %d not found.",i); ! } ! } ! ! double sum = 0.0; ! for (size_t i = 0; i < probs.size(); ++i) { ! probs[i] = exp(probs[i]); ! sum += probs[i]; ! } ! ! for (size_t i = 0; i < probs.size(); ++i) { ! probs[i] /= sum; } ! outcomes.resize(m_outcome_map->size()); ! for (size_t i = 0;i < outcomes.size(); ++i) { ! outcomes[i].first = (*m_outcome_map)[i]; ! outcomes[i].second = probs[i]; ! } ! if (sort_result) ! sort(outcomes.begin(),outcomes.end(), cmp_outcome()); } --- 325,373 ---- * \sa eval() */ void MaxentModel::eval_all(const context_type& context, ! std::vector >& outcomes, ! bool sort_result) const { ! assert(m_params); ! ! //TODO:static? ! static vector probs; ! if (probs.size() != m_outcome_map->size()) ! probs.resize(m_outcome_map->size()); ! fill(probs.begin(), probs.end(), 0.0); ! ! size_t pid; ! for (size_t i = 0; i < context.size(); ++i) { ! pid = m_pred_map->id(context[i].first); ! if (pid != m_pred_map->null_id) { ! std::vector >& param = (*m_params)[pid]; ! float fval = context[i].second; ! for(size_t j = 0;j < param.size(); ++j) ! probs[param[j].first] += m_theta[param[j].second] * fval; ! } else { ! //#warning how to deal with unseen predicts? ! //m_debug.debug(0,"Predict id %d not found.",i); } + } ! double sum = 0.0; ! for (size_t i = 0; i < probs.size(); ++i) { ! probs[i] = exp(probs[i]); ! sum += probs[i]; ! } ! ! for (size_t i = 0; i < probs.size(); ++i) { ! probs[i] /= sum; ! } ! ! outcomes.resize(m_outcome_map->size()); ! for (size_t i = 0;i < outcomes.size(); ++i) { ! outcomes[i].first = (*m_outcome_map)[i]; ! outcomes[i].second = probs[i]; ! } ! if (sort_result) ! sort(outcomes.begin(),outcomes.end(), cmp_outcome()); } *************** *** 385,430 **** * \sa eval_all() */ double MaxentModel::eval(const context_type& context, ! const outcome_type& outcome) const{ ! size_t oid = m_outcome_map->id(outcome); ! if (oid == m_outcome_map->null_id) { ! cerr << "[MaxentModel::eval()] unknown outcome id:" << oid << endl; ! return 0.0; } ! static vector probs; ! if (probs.size() != m_outcome_map->size()) ! probs.resize(m_outcome_map->size()); ! fill(probs.begin(), probs.end(), 0.0); ! ! size_t pid; ! for (size_t i = 0; i < context.size(); ++i) { ! pid = m_pred_map->id(context[i].first); ! if (pid != m_pred_map->null_id) { ! std::vector >& param = (*m_params)[pid]; ! float fval = context[i].second; ! for(size_t j = 0;j < param.size(); ++j) ! probs[param[j].first] += m_theta[param[j].second] * fval; ! } else { ! //#warning how to deal with unseen predicts? ! //m_debug.debug(0,"Predict id %d not found.",i); ! } ! } ! double sum = 0.0; ! for (size_t i = 0; i < probs.size(); ++i) { ! probs[i] = exp(probs[i]); ! if (!finite(probs[i])) ! probs[i] = numeric_limits::max();// DBL_MAX; ! sum += probs[i]; ! } ! for (size_t i = 0; i < probs.size(); ++i) { ! probs[i] /= sum; ! } ! ! return probs[oid]; } --- 385,430 ---- * \sa eval_all() */ double MaxentModel::eval(const context_type& context, ! const outcome_type& outcome) const{ ! size_t oid = m_outcome_map->id(outcome); ! if (oid == m_outcome_map->null_id) { ! cerr << "[MaxentModel::eval()] unknown outcome id:" << oid << endl; ! return 0.0; ! } ! ! static vector probs; ! if (probs.size() != m_outcome_map->size()) ! probs.resize(m_outcome_map->size()); ! fill(probs.begin(), probs.end(), 0.0); ! ! size_t pid; ! for (size_t i = 0; i < context.size(); ++i) { ! pid = m_pred_map->id(context[i].first); ! if (pid != m_pred_map->null_id) { ! std::vector >& param = (*m_params)[pid]; ! float fval = context[i].second; ! for(size_t j = 0;j < param.size(); ++j) ! probs[param[j].first] += m_theta[param[j].second] * fval; ! } else { ! //#warning how to deal with unseen predicts? ! //m_debug.debug(0,"Predict id %d not found.",i); } + } ! double sum = 0.0; ! for (size_t i = 0; i < probs.size(); ++i) { ! probs[i] = exp(probs[i]); ! if (!finite(probs[i])) ! probs[i] = numeric_limits::max();// DBL_MAX; ! sum += probs[i]; ! } ! for (size_t i = 0; i < probs.size(); ++i) { ! probs[i] /= sum; ! } ! return probs[oid]; } *************** *** 438,454 **** * \sa eval_all() */ MaxentModel::outcome_type MaxentModel::predict(const context_type& context) const { ! std::vector > outcomes; ! eval_all(context, outcomes, false); ! vector >::iterator it; ! vector >::iterator max_it; ! max_it = it = outcomes.begin(); ! ++it; ! for (; it != outcomes.end(); ++it){ ! if (it->second > max_it->second) ! max_it = it; ! } ! return max_it->first; } /** --- 438,454 ---- * \sa eval_all() */ MaxentModel::outcome_type MaxentModel::predict(const context_type& context) const { ! std::vector > outcomes; ! eval_all(context, outcomes, false); ! vector >::iterator it; ! vector >::iterator max_it; ! max_it = it = outcomes.begin(); ! ++it; ! for (; it != outcomes.end(); ++it){ ! if (it->second > max_it->second) ! max_it = it; ! } ! return max_it->first; } /** *************** *** 457,467 **** * @param model The name of the model to load */ void MaxentModel::load(const string& model) { ! MaxentModelFile f; ! f.load(model); ! m_pred_map = f.pred_map(); ! m_outcome_map = f.outcome_map(); ! f.params(m_params, m_n_theta, m_theta); } /** --- 457,467 ---- * @param model The name of the model to load */ void MaxentModel::load(const string& model) { ! MaxentModelFile f; ! f.load(model); ! m_pred_map = f.pred_map(); ! m_outcome_map = f.outcome_map(); ! f.params(m_params, m_n_theta, m_theta); } /** *************** *** 472,484 **** * smaller (if compiled with libz) and much faster to load. */ void MaxentModel::save(const string& model, bool binary) const { ! if (!m_params) ! throw runtime_error("no model to save (empty model)"); ! MaxentModelFile f; ! f.set_pred_map(m_pred_map); ! f.set_outcome_map(m_outcome_map); ! f.set_params(m_params, m_n_theta, m_theta); ! f.save(model, binary); } /** --- 472,484 ---- * smaller (if compiled with libz) and much faster to load. */ void MaxentModel::save(const string& model, bool binary) const { ! if (!m_params) ! throw runtime_error("no model to save (empty model)"); ! MaxentModelFile f; ! f.set_pred_map(m_pred_map); ! f.set_outcome_map(m_outcome_map); ! f.set_params(m_params, m_n_theta, m_theta); ! f.save(model, binary); } /** *************** *** 503,535 **** * Default tol = 1-E05 */ void MaxentModel::train(size_t iter, const std::string& method, ! double sigma2, double tol) { ! if (!m_es) ! throw runtime_error("unable to train an emtpy model"); ! scoped_ptr t; ! if (method == "lbfgs") { #ifdef HAVE_FORTRAN ! t.reset(new LBFGSTrainer); #else ! cerr << "LBFGS module not compiled in, use GIS instead" << endl; ! t.reset(new GISTrainer); #endif ! } ! else if (method == "gis") ! t.reset(new GISTrainer); ! else ! throw runtime_error("training method not supported"); ! ! shared_array gaussian; ! if (sigma2 != 0.0) { // use Gaussian prior ! gaussian.reset(new double[m_n_theta]); ! fill(gaussian.get(), gaussian.get() + m_n_theta, sigma2); ! } ! ! t->set_training_data(m_es, m_params, m_n_theta, ! m_theta, gaussian, m_outcome_map->size(), m_heldout_es); ! t->train(iter, tol); } // The following functions are wrapper call for the corresponding functions --- 503,535 ---- * Default tol = 1-E05 */ void MaxentModel::train(size_t iter, const std::string& method, ! double sigma2, double tol) { ! if (!m_es) ! throw runtime_error("unable to train an emtpy model"); ! scoped_ptr t; ! if (method == "lbfgs") { #ifdef HAVE_FORTRAN ! t.reset(new LBFGSTrainer); #else ! cerr << "LBFGS module not compiled in, use GIS instead" << endl; ! t.reset(new GISTrainer); #endif ! } ! else if (method == "gis") ! t.reset(new GISTrainer); ! else ! throw runtime_error("training method not supported"); ! ! shared_array gaussian; ! if (sigma2 != 0.0) { // use Gaussian prior ! gaussian.reset(new double[m_n_theta]); ! fill(gaussian.get(), gaussian.get() + m_n_theta, sigma2); ! } ! ! t->set_training_data(m_es, m_params, m_n_theta, ! m_theta, gaussian, m_outcome_map->size(), m_heldout_es); ! t->train(iter, tol); } // The following functions are wrapper call for the corresponding functions *************** *** 560,573 **** * \sa eval() */ void MaxentModel::eval_all(const vector& context, ! std::vector >& outcomes, ! bool sort_result) const { ! context_type c(context.size()); ! for (size_t i = 0;i < context.size(); ++i) { ! c[i].first = context[i]; ! c[i].second = 1.0; ! } ! eval_all(c, outcomes, sort_result); } /** --- 560,573 ---- * \sa eval() */ void MaxentModel::eval_all(const vector& context, ! std::vector >& outcomes, ! bool sort_result) const { ! context_type c(context.size()); ! for (size_t i = 0;i < context.size(); ++i) { ! c[i].first = context[i]; ! c[i].second = 1.0; ! } ! eval_all(c, outcomes, sort_result); } /** *************** *** 586,598 **** * \sa eval_all() */ double MaxentModel::eval(const vector& context, ! const outcome_type& outcome) const{ ! context_type c(context.size()); ! for (size_t i = 0;i < context.size(); ++i) { ! c[i].first = context[i]; ! c[i].second = 1.0; ! } ! return eval(c, outcome); } /** --- 586,598 ---- * \sa eval_all() */ double MaxentModel::eval(const vector& context, ! const outcome_type& outcome) const{ ! context_type c(context.size()); ! for (size_t i = 0;i < context.size(); ++i) { ! c[i].first = context[i]; ! c[i].second = 1.0; ! } ! return eval(c, outcome); } /** *************** *** 607,638 **** * \sa eval_all() */ MaxentModel::outcome_type MaxentModel::predict(const vector& context) const { ! context_type c(context.size()); ! for (size_t i = 0;i < context.size(); ++i) { ! c[i].first = context[i]; ! c[i].second = 1.0; ! } ! return predict(c); } // for python __str__() binding const char* MaxentModel::__str__() const { ! if (!m_params) ! return "Conditional Maximum Entropy Model (C++ version) [empty]"; ! else { ! size_t n = 0; ! for (size_t i = 0; i < m_params->size(); ++i) ! n += (*m_params)[i].size(); ! ! static char buf[300]; ! sprintf(buf, ! "Conditional Maximum Entropy Model (C++ version)\n" ! "Number of context predicates : %d\n" ! "Number of outcome : %d\n" ! "Number of paramaters(features): %d" , m_pred_map->size() ! , m_outcome_map->size() , n); ! return buf; ! } } } // namespace maxent --- 607,638 ---- * \sa eval_all() */ MaxentModel::outcome_type MaxentModel::predict(const vector& context) const { ! context_type c(context.size()); ! for (size_t i = 0;i < context.size(); ++i) { ! c[i].first = context[i]; ! c[i].second = 1.0; ! } ! return predict(c); } // for python __str__() binding const char* MaxentModel::__str__() const { ! if (!m_params) ! return "Conditional Maximum Entropy Model (C++ version) [empty]"; ! else { ! size_t n = 0; ! for (size_t i = 0; i < m_params->size(); ++i) ! n += (*m_params)[i].size(); ! ! static char buf[300]; ! sprintf(buf, ! "Conditional Maximum Entropy Model (C++ version)\n" ! "Number of context predicates : %d\n" ! "Number of outcome : %d\n" ! "Number of paramaters(features): %d" , m_pred_map->size() ! , m_outcome_map->size() , n); ! return buf; ! } } } // namespace maxent diff -cr maxent-old/src/maxentmodel.hpp maxent-20061005/src/maxentmodel.hpp *** maxent-old/src/maxentmodel.hpp Thu Oct 5 07:37:19 2006 --- maxent-20061005/src/maxentmodel.hpp Tue Nov 25 09:38:51 2008 *************** *** 54,59 **** --- 54,60 ---- using boost::shared_array; extern int verbose; // set this to 0 if you do not want verbose output + extern int heldout_ll; struct maxent_pickle_suite; /** Only in maxent-20061005/src: opt Only in maxent-20061005/test: ._.svn Only in maxent-20061005/test: ._Jamfile Only in maxent-20061005/test: ._README Only in maxent-20061005/test: ._data Only in maxent-20061005/test: ._minunit.h Only in maxent-20061005/test: ._runall.py Only in maxent-20061005/test: ._test_display.cpp Only in maxent-20061005/test: ._test_event.cpp Only in maxent-20061005/test: ._test_gistrainer.cpp Only in maxent-20061005/test: ._test_itemmap.cpp Only in maxent-20061005/test: ._test_lbfgstrainer.cpp Only in maxent-20061005/test: ._test_maxentmodel.cpp Only in maxent-20061005/test: ._test_mmapfile.cpp Only in maxent-20061005/test: ._test_modelfile.cpp Only in maxent-20061005/test: ._test_pyext.py Only in maxent-20061005/test/.svn: ._README.txt Only in maxent-20061005/test/.svn: ._empty-file Only in maxent-20061005/test/.svn: ._entries Only in maxent-20061005/test/.svn: ._format Only in maxent-20061005/test/.svn: ._prop-base Only in maxent-20061005/test/.svn: ._props Only in maxent-20061005/test/.svn: ._text-base Only in maxent-20061005/test/.svn: ._tmp Only in maxent-20061005/test/.svn: ._wcprops Only in maxent-20061005/test/.svn/prop-base: ._Jamfile.svn-base Only in maxent-20061005/test/.svn/prop-base: ._README.svn-base Only in maxent-20061005/test/.svn/prop-base: ._minunit.h.svn-base Only in maxent-20061005/test/.svn/prop-base: ._runall.py.svn-base Only in maxent-20061005/test/.svn/prop-base: ._test_display.cpp.svn-base Only 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maxent-20061005/test/data: .git Only in maxent-20061005/test/data/.svn: ._README.txt Only in maxent-20061005/test/data/.svn: ._empty-file Only in maxent-20061005/test/data/.svn: ._entries Only in maxent-20061005/test/data/.svn: ._format Only in maxent-20061005/test/data/.svn: ._prop-base Only in maxent-20061005/test/data/.svn: ._props Only in maxent-20061005/test/data/.svn: ._text-base Only in maxent-20061005/test/data/.svn: ._tmp Only in maxent-20061005/test/data/.svn: ._wcprops Only in maxent-20061005/test/data/.svn/prop-base: ._me_gis_train.ev.svn-base Only in maxent-20061005/test/data/.svn/prop-base: ._me_gis_train2.ev.svn-base Only in maxent-20061005/test/data/.svn/prop-base: ._me_model.txt.svn-base Only in maxent-20061005/test/data/.svn/prop-base: ._me_model2.txt.svn-base Only in maxent-20061005/test/data/.svn/prop-base: ._model_temp.ev.svn-base Only in maxent-20061005/test/data/.svn/prop-base: ._rf_model.txt.svn-base Only in maxent-20061005/test/data/.svn/props: 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Only in maxent-20061005/test/data/.svn/tmp: ._wcprops diff -cr maxent-old/test/data/me_model.txt maxent-20061005/test/data/me_model.txt *** maxent-old/test/data/me_model.txt Thu Oct 5 07:37:19 2006 --- maxent-20061005/test/data/me_model.txt Thu Nov 13 20:27:01 2008 *************** *** 1,4 **** ! #txt,maxent 2 in out --- 1,4 ---- ! #txt,maxent 2 in out Only in maxent-20061005/tools: ._.svn Only in maxent-20061005/tools: ._build_jam.sh Only in maxent-20061005/tools: ._jam-2.5.tar Only in maxent-20061005/tools: ._mingw.diff Only in maxent-20061005/tools/.svn: ._README.txt Only in maxent-20061005/tools/.svn: ._empty-file Only in maxent-20061005/tools/.svn: ._entries Only in maxent-20061005/tools/.svn: ._format Only in maxent-20061005/tools/.svn: ._prop-base Only in maxent-20061005/tools/.svn: ._props Only in maxent-20061005/tools/.svn: ._text-base Only in maxent-20061005/tools/.svn: ._tmp Only in maxent-20061005/tools/.svn: ._wcprops Only in maxent-20061005/tools/.svn/prop-base: ._build_jam.sh.svn-base Only in maxent-20061005/tools/.svn/prop-base: ._jam-2.5.tar.svn-base Only in maxent-20061005/tools/.svn/prop-base: ._mingw.diff.svn-base Only in maxent-20061005/tools/.svn/props: ._build_jam.sh.svn-work Only in maxent-20061005/tools/.svn/props: ._jam-2.5.tar.svn-work Only in maxent-20061005/tools/.svn/props: ._mingw.diff.svn-work Only in maxent-20061005/tools/.svn/text-base: ._build_jam.sh.svn-base Only in maxent-20061005/tools/.svn/text-base: ._jam-2.5.tar.svn-base Only in maxent-20061005/tools/.svn/text-base: ._mingw.diff.svn-base Only in maxent-20061005/tools/.svn/tmp: ._prop-base Only in maxent-20061005/tools/.svn/tmp: ._props Only in maxent-20061005/tools/.svn/tmp: ._text-base Only in maxent-20061005/tools/.svn/tmp: ._wcprops Only in maxent-20061005/tools: jam